Software
Here is a list of software I developed or codeveloped.
R CRAN/Bioconductor packages

ChIPComp :differential protein binding/histone modification analysis for ChIPseq data.

traseR(TRaitAssociated SNP EnRichment analysis) :disease/traits enrichment analyses of traitassociated SNPs in arbitrary genomic intervals.

glmgraph(GRAPHconstrained regularization for sparse Generalized Linear Models) :network/treebased penalized regression method. This method could be useful in highdimensional, sparse data prediction when the gragh/network structure among predictors are known.
github software packages

glmmTree :an R package for predictive modeling of microbiome data using a phylogenetic treebased generalized mixed effects model

SICS :an R package for predictive modeling of microbiome data using a phylogenyconstrained regularization for sparse generalized linear models with encouraging local smoothing

GMPR :an R package for normalizing zeroinflated count data particular microbiome sequencing data

BAMMSC :an R package for a bayesian mixture model for clustering dropletbased single cell transcriptomic data from population studies

circMeta :an R package for genomic feature annotation and differential expression analysis of circular RNAs